Publications


The broad role of Nkx3.2 in the development of the zebrafish axial skeleton

Waldmann L, Leyhr J, Zhang H, ..., Allalou A, Haitina T PLoS ONE 16 (8) e0255953 [2021-08-19; online 2021-08-19] Genome Engineering Zebrafish [Service]

Heparan Sulfate Biosynthesis in Zebrafish.

Filipek-Górniok B, Habicher J, Ledin J, Kjellén L J. Histochem. Cytochem. 69 (1) 49-60 [2021-01-00; online 2020-11-20] Genome Engineering Zebrafish [Collaborative]

Lysophosphatidic Acid-Mediated GPR35 Signaling in CX3CR1 + Macrophages Regulates Intestinal Homeostasis.

Kaya B, Doñas C, Wuggenig P, ..., Villablanca EJ, Niess JH Cell Rep 32 (5) 107979 [2020-08-04; online 2020-08-07] Bioinformatics Compute and Storage [Service] Genome Engineering Zebrafish [Service]

zOPT: an open source optical projection tomography system and methods for rapid 3D zebrafish imaging.

Zhang H, Waldmann L, Manuel R, ..., Haitina T, Allalou A Biomed. Opt. Express 11 (8) 4290-4305 [2020-08-01; online 2020-07-15] BioImage Informatics Bioinformatics Compute and Storage [Service] Genome Engineering Zebrafish [Service]

Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR/Cas9-based approach.

von der Heyde B, Emmanouilidou A, Mazzaferro E, ..., Brooke HL, den Hoed M Sci Rep 10 (1) 11831 [2020-07-16; online 2020-07-16] BioImage Informatics Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Collaborative] Bioinformatics Support, Infrastructure and Training [Collaborative] Genome Engineering Zebrafish [Service] NGI Stockholm (Genomics Applications) [Service] NGI Stockholm (Genomics Production) [Service] NGI Uppsala (SNP&SEQ Technology Platform) [Service] NGI Uppsala (Uppsala Genome Center) [Collaborative] National Genomics Infrastructure [Service]

In-plate toxicometabolomics of single zebrafish embryos.

Ribbenstedt A, Posselt M, Brunius C, Benskin JP Mol Omics 16 (3) 185-194 [2020-06-01; online 2020-03-19] Bioinformatics Compute and Storage [Service] Genome Engineering Zebrafish [Service] Behavioural characterization of dmrt3a mutant zebrafish reveals crucial aspects of vertebrate locomotion through phenotypes related to acceleration

Integrative discovery of treatments for high-risk neuroblastoma.

Almstedt E, Elgendy R, Hekmati N, ..., Krona C, Nelander S Nat Commun 11 (1) 71 [2020-01-03; online 2020-01-03] Bioinformatics Compute and Storage [Service] Genome Engineering Zebrafish [Service] Circadian regulation of phosphodiesterase 6 genes in zebrafish differs between cones and rods: Implications for photopic and scotopic vision.

Zebrafish embryo as a replacement model for initial biocompatibility studies of biomaterials and drug delivery systems.

Rothenbücher TSP, Ledin J, Gibbs D, ..., Persson C, Hulsart-Billström G Acta Biomater 100 (-) 235-243 [2019-12-00; online 2019-10-01] Genome Engineering Zebrafish

The ALK-1/SMAD/ATOH8 axis attenuates hypoxic responses and protects against the development of pulmonary arterial hypertension.

Morikawa M, Mitani Y, Holmborn K, ..., Heldin CH, Miyazono K Sci Signal 12 (607) eaay4430 [2019-11-12; online 2019-11-12] Genome Engineering Zebrafish [Collaborative]

TAF1, associated with intellectual disability in humans, is essential for embryogenesis and regulates neurodevelopmental processes in zebrafish.

Gudmundsson S, Wilbe M, Filipek-Górniok B, ..., Annerén G, Bondeson ML Sci Rep 9 (1) 10730 [2019-07-24; online 2019-07-24] BioImage Informatics [Collaborative] Bioinformatics Compute and Storage [Service] Bioinformatics Support and Infrastructure [Service] Bioinformatics Support, Infrastructure and Training [Service] Clinical Genomics Uppsala [Collaborative] Genome Engineering Zebrafish [Collaborative] NGI Uppsala (SNP&SEQ Technology Platform) [Service] National Genomics Infrastructure [Service]

Peri-arterial specification of vascular mural cells from naïve mesenchyme requires Notch signaling.

Ando K, Wang W, Peng D, ..., Mochizuki N, Betsholtz C Development 146 (2) dev165589 [2019-01-25; online 2019-01-25] Genome Engineering Zebrafish [Service]

Expression of chondroitin/dermatan sulfate glycosyltransferases during early zebrafish development.

Filipek-Górniok B, Holmborn K, Haitina T, ..., Kreuger J, Ledin J Dev. Dyn. 242 (8) 964-975 [2013-08-00; online 2013-06-18] Genome Engineering Zebrafish

On the roles and regulation of chondroitin sulfate and heparan sulfate in zebrafish pharyngeal cartilage morphogenesis.

Holmborn K, Habicher J, Kasza Z, ..., Kreuger J, Ledin J J. Biol. Chem. 287 (40) 33905-33916 [2012-09-28; online 2012-08-06] Genome Engineering Zebrafish